C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Tia1 cytotoxic granule-associated RNA binding protein-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106226 Tial1-001 ENSMUSG00000030846 10090 - 7:128439777-128461672 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106226
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106226 4.328±1.80 3.503±0.36 22.401±0.00 3.445±0.63 2.746±0.38 2.044±1.00 3.144±0.31 4.009±0.98 4.533±0.48 2.613±1.04 5.650±1.21 5.442±0.02 1.603±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IZ CIL_0003IZ_0002 CGP 7:128373621-128461717
CIL_0004GP CIL_0004GP_0003 CGP 7:128439777-128546977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006915 IEA apoptotic process
GO:0007281 IMP germ cell development
GO:0008284 IMP positive regulation of cell proliferation
GO:0010494 IDA cytoplasmic stress granule
GO:0017091 IDA AU-rich element binding
GO:0017145 IMP stem cell division
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000135321 tial1-002 protein_coding Danio_rerio 0 710
ENSDART00000147774 tial1-003 retained_intron Danio_rerio 0 318
ENST00000369086 TIAL1-013 protein_coding Homo_sapiens 0 448
ENST00000369087 TIAL1-002 retained_intron Homo_sapiens 0 715
ENST00000369093 TIAL1-005 protein_coding Homo_sapiens 0 3157
ENST00000412524 TIAL1-012 protein_coding Homo_sapiens 0 673
ENST00000436547 TIAL1-009 protein_coding Homo_sapiens 0 1847
ENST00000462373 TIAL1-011 processed_transcript Homo_sapiens 0 302
ENST00000463089 TIAL1-004 processed_transcript Homo_sapiens 0 1002
ENST00000470635 TIAL1-001 processed_transcript Homo_sapiens 0 259
ENST00000470781 TIAL1-008 retained_intron Homo_sapiens 0 1160
ENST00000479729 TIAL1-010 nonsense_mediated_decay Homo_sapiens 0 298
ENST00000489822 TIAL1-006 retained_intron Homo_sapiens 0 1160
ENST00000495821 TIAL1-003 retained_intron Homo_sapiens 0 383
ENST00000497671 TIAL1-007 nonsense_mediated_decay Homo_sapiens 0 1445

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