C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 157
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106398 Rnf157-003 ENSMUSG00000052949 10090 - 11:116336353-116413004 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastKidneyLiverLungOvaryENSMUST00000106398
Transcript ID Adipose Adrenal Breast Kidney Liver Lung Ovary
ENSMUST00000106398 0.388±0.00 0.772±0.02 0.637±0.11 0.368±0.00 0.177±0.06 0.227±0.00 0.834±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_0007CH CIL_0007CH_0002 CGP 11:116330704-116413032
CIL_0007BT CIL_0007BT_0002 CGP 11:116336353-116439077

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262370 MGRN1-001 protein_coding Homo_sapiens 0 455
ENST00000269391 RNF157-001 protein_coding Homo_sapiens 0 2076
ENST00000319945 RNF157-010 protein_coding Homo_sapiens 0 2337
ENST00000399577 MGRN1-004 protein_coding Homo_sapiens 0 455
ENST00000415496 MGRN1-201 protein_coding Homo_sapiens 0 455
ENST00000536343 MGRN1-002 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000586183 MGRN1-006 protein_coding Homo_sapiens 0 455
ENST00000587747 MGRN1-003 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000588015 MGRN1-014 processed_transcript Homo_sapiens 0 215
ENST00000588994 MGRN1-005 protein_coding Homo_sapiens 0 455
ENST00000589317 RNF157-007 retained_intron Homo_sapiens 0 279
ENST00000590790 MGRN1-017 protein_coding Homo_sapiens 0 412
ENST00000591355 RNF157-008 protein_coding Homo_sapiens 0 219
ENST00000591615 RNF157-003 protein_coding Homo_sapiens 0 274
ENST00000591673 MGRN1-010 processed_transcript Homo_sapiens 0 226
ENST00000592271 RNF157-004 protein_coding Homo_sapiens 0 322
ENST00000593155 RNF157-005 retained_intron Homo_sapiens 0 326

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