C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA-binding region (RNP1, RRM) containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106535 Rnpc3-002 ENSMUSG00000027981 10090 - 3:113606336-113630149 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000106535
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000106535 4.397±1.88 2.863±0.72 9.853±5.51 1.149±0.37 1.414±0.26 1.548±0.48 2.268±0.17 3.129±0.89 3.455±1.07 1.413±0.15 2.480±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005I9 CIL_0005I9_0005 CGP 3:113529403-113606699

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005634 ISS nucleus
GO:0005689 ISS U12-type spliceosomal complex
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000423855 RNPC3-008 protein_coding Homo_sapiens 0 1740
ENST00000524631 RNPC3-001 protein_coding Homo_sapiens 0 1851
ENST00000524641 RNPC3-006 protein_coding Homo_sapiens 0 394
ENST00000525323 RNPC3-007 retained_intron Homo_sapiens 0 254
ENST00000527062 RNPC3-005 protein_coding Homo_sapiens 0 833
ENST00000531883 RNPC3-004 protein_coding Homo_sapiens 0 575
ENST00000532117 RNPC3-009 nonsense_mediated_decay Homo_sapiens 3.00018e-42 174
ENST00000533099 RNPC3-003 protein_coding Homo_sapiens 0 1903
ENST00000533834 RNPC3-002 retained_intron Homo_sapiens 0 556
ENST00000605810 RP11-963H1.1-001 processed_pseudogene Homo_sapiens 0 1461

Loading