C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 9030624J02 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106552 9030624J02Rik-007 ENSMUSG00000030982 10090 + 7:118740747-118841479 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000106552
Transcript ID Placenta
ENSMUST00000106552 12.511±2.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MW CIL_0006MW_0002 CGP 7:118712552-118842966
CIL_00054B CIL_00054B_0002 CGP 7:118740226-118856254

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251143 C16orf62-201 protein_coding Homo_sapiens 0 1133
ENST00000417362 C16orf62-024 protein_coding Homo_sapiens 0 1129
ENST00000438132 C16orf62-003 protein_coding Homo_sapiens 0 1133
ENST00000448695 C16orf62-202 protein_coding Homo_sapiens 0 961
ENST00000513947 C16orf62-004 protein_coding Homo_sapiens 0 1118
ENST00000535164 C16orf62-011 retained_intron Homo_sapiens 0 350
ENST00000538552 C16orf62-014 protein_coding Homo_sapiens 0 296
ENST00000539322 C16orf62-005 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000539705 C16orf62-012 retained_intron Homo_sapiens 1e-25 121
ENST00000540101 C16orf62-023 processed_transcript Homo_sapiens 0 294
ENST00000541153 C16orf62-013 retained_intron Homo_sapiens 0 351
ENST00000542263 C16orf62-001 protein_coding Homo_sapiens 0 2998
ENST00000543152 C16orf62-002 protein_coding Homo_sapiens 0 961
ENST00000544275 C16orf62-016 processed_transcript Homo_sapiens 4e-39 165
ENST00000544670 C16orf62-006 protein_coding Homo_sapiens 0 444
ENST00000546175 C16orf62-015 retained_intron Homo_sapiens 0 424

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