C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107004 Alg6-004 ENSMUSG00000073792 10090 + 4:99715676-99752885 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastKidneyLiverLungOvaryPlacentaENSMUST00000107004
Transcript ID Adipose Adrenal Breast Kidney Liver Lung Ovary Placenta
ENSMUST00000107004 1.906±0.00 0.694±0.00 1.237±0.36 1.308±0.36 0.755±0.00 1.307±0.37 1.726±0.40 2.027±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KW CIL_0007KW_0002 UCNEbase 4:99267882-99771733
CIL_0008AH CIL_0008AH_0002 VISTA 4:99273882-99874766
CIL_0002G4 CIL_0002G4_0002 CGP 4:99656299-99763460
CIL_0002G7 CIL_0002G7_0002 CGP 4:99715664-99929813

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005789 IEA endoplasmic reticulum membrane
GO:0008152 IEA metabolic process
GO:0016758 IEA transferase activity, transferring hexosyl groups

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263440 ALG6-006 protein_coding Homo_sapiens 1e-34 152
ENST00000371108 ALG6-001 protein_coding Homo_sapiens 2e-34 152
ENST00000487136 ALG6-002 nonsense_mediated_decay Homo_sapiens 6e-24 115
ENST00000603108 ALG6-007 nonsense_mediated_decay Homo_sapiens 1e-34 152

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