C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107158 Slc24a2-201 ENSMUSG00000037996 10090 - 4:86983129-87227963 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverMuscleOvaryPlacentaENSMUST00000107158
Transcript ID Adipose Bladder Brain Breast Colon Liver Muscle Ovary Placenta
ENSMUST00000107158 0.014±0.00 0.009±0.00 9.049±0.00 0.014±0.01 0.027±0.01 0.002±0.00 0.086±0.00 0.042±0.02 0.002±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DB CIL_0007DB_0002 CGP 4:86874396-87230477
CIL_0007D2 CIL_0007D2_0002 CGP 4:86983124-88033364

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005262 IDA calcium channel activity
GO:0005509 IEA calcium ion binding
GO:0006816 IDA calcium ion transport
GO:0006874 IMP cellular calcium ion homeostasis
GO:0007612 IMP learning
GO:0007613 IMP memory
GO:0008273 ISO calcium, potassium:sodium antiporter activity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016151 IEA nickel cation binding
GO:0030145 IEA manganese ion binding
GO:0030955 IEA potassium ion binding
GO:0031226 IEA intrinsic component of plasma membrane
GO:0031402 IEA sodium ion binding
GO:0034220 ISO ion transmembrane transport
GO:0035725 ISO sodium ion transmembrane transport
GO:0046870 IEA cadmium ion binding
GO:0046983 IEA protein dimerization activity
GO:0060291 IMP long-term synaptic potentiation
GO:0060292 IMP long term synaptic depression
GO:0070588 IDA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000286344 SLC24A2-002 protein_coding Homo_sapiens 0 1314
ENST00000341998 SLC24A2-001 protein_coding Homo_sapiens 0 1352
ENST00000393265 SLC24A4-003 protein_coding Homo_sapiens 4e-18 99
ENST00000525557 SLC24A4-007 protein_coding Homo_sapiens 2e-16 94
ENST00000531433 SLC24A4-002 protein_coding Homo_sapiens 4e-18 99
ENST00000532405 SLC24A4-001 protein_coding Homo_sapiens 8e-18 99
ENST00000554461 SLC24A4-009 protein_coding Homo_sapiens 0.00000000000003 82

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