C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ets variant 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107176 Etv4-001 ENSMUSG00000017724 10090 - 11:101769747-101785371 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000107176
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000107176 0.166±0.11 0.378±0.12 0.054±0.00 0.779±0.00 0.828±0.15 2.747±1.08 0.297±0.09 0.043±0.02 0.112±0.04 0.438±0.22 0.157±0.06 0.156±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000996 CIL_000996_0002 VISTA 11:101501412-102102123
CIL_00090X CIL_00090X_0002 VISTA 11:101529827-102131014
CIL_000997 CIL_000997_0002 VISTA 11:101567301-102168287
CIL_000495 CIL_000495_0002 CGP 11:101732919-101785371
CIL_00048L CIL_00048L_0002 CGP 11:101769742-101894374

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IDA DNA binding
GO:0005622 IDA intracellular
GO:0005634 IBA nucleus
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0008045 IMP motor neuron axon guidance
GO:0033600 IMP negative regulation of mammary gland epithelial cell proliferation
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048863 IMP stem cell differentiation
GO:0060444 IMP branching involved in mammary gland duct morphogenesis
GO:0060762 IDA regulation of branching involved in mammary gland duct morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319349 ETV4-001 protein_coding Homo_sapiens 0 2084
ENST00000393664 ETV4-005 protein_coding Homo_sapiens 0 1886
ENST00000538265 ETV4-201 protein_coding Homo_sapiens 0 1733
ENST00000545089 ETV4-004 protein_coding Homo_sapiens 0 1208
ENST00000545954 ETV4-002 protein_coding Homo_sapiens 0 1731
ENST00000585508 ETV4-007 retained_intron Homo_sapiens 0 488
ENST00000586764 ETV4-010 protein_coding Homo_sapiens 0 339
ENST00000586826 ETV4-006 protein_coding Homo_sapiens 0 830
ENST00000587151 ETV4-009 retained_intron Homo_sapiens 0 433
ENST00000589898 DHX8-006 protein_coding Homo_sapiens 2e-18 97
ENST00000590236 ETV4-008 retained_intron Homo_sapiens 0 364
ENST00000591713 ETV4-003 protein_coding Homo_sapiens 0 1882

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