C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neighbor of Brca1 gene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107213 Nbr1-003 ENSMUSG00000017119 10090 + 11:101552858-101581951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107213
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107213 8.027±0.91 18.357±0.70 17.369±2.75 4.079±0.60 5.971±1.12 6.133±1.61 12.226±1.25 9.396±2.65 8.500±2.11 5.820±0.35 11.857±5.76 20.795±4.47 18.223±2.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040M CIL_00040M_0002 CGP 11:101488764-101581951
CIL_000996 CIL_000996_0002 VISTA 11:101501412-102102123
CIL_00090X CIL_00090X_0002 VISTA 11:101529827-102131014
CIL_0000KX CIL_0000KX_0003 CGP 11:101552149-101591788

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000407 IDA pre-autophagosomal structure
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341165 NBR1-001 protein_coding Homo_sapiens 0 1973
ENST00000422280 NBR1-201 protein_coding Homo_sapiens 0 1973
ENST00000542611 NBR1-002 protein_coding Homo_sapiens 0 1718
ENST00000585505 NBR1-005 retained_intron Homo_sapiens 0 1061
ENST00000586650 NBR1-007 protein_coding Homo_sapiens 0 217
ENST00000589872 NBR1-004 protein_coding Homo_sapiens 0 1973
ENST00000590996 NBR1-003 protein_coding Homo_sapiens 0 1973
ENST00000592304 NBR1-006 retained_intron Homo_sapiens 9.99967e-42 174
ENST00000617399 NBR1-202 misc_RNA Homo_sapiens 2e-17 90

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