C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PC4 and SFRS1 interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107215 Psip1-002 ENSMUSG00000028484 10090 - 4:83461871-83486458 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000107215
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000107215 10.416±0.00 67.738±24.73 37.976±8.71 42.709±16.27 17.849±5.17 9.638±8.55 6.566±4.25 10.101±2.99 64.188±35.55 25.339±14.55 30.298±2.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000147 CIL_000147_0002 CGP 4:83220300-83467676
CIL_0005UX CIL_0005UX_0003 CGP 4:83417724-83486459
CIL_00051U CIL_00051U_0003 CGP 4:83455680-83864670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000395 ISS mRNA 5'-splice site recognition
GO:0001105 ISS RNA polymerase II transcription coactivator activity
GO:0003682 ISS chromatin binding
GO:0005634 ISS nucleus
GO:0005654 ISS nucleoplasm
GO:0005720 ISS nuclear heterochromatin
GO:0006351 IEA transcription, DNA-templated
GO:0006979 IDA response to oxidative stress
GO:0009408 IDA response to heat
GO:0033613 ISS activating transcription factor binding
GO:0034399 ISS nuclear periphery
GO:0035327 ISS transcriptionally active chromatin
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0097100 ISS supercoiled DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380715 PSIP1-006 protein_coding Homo_sapiens 0 1458
ENST00000380716 PSIP1-007 protein_coding Homo_sapiens 0 2049
ENST00000380733 PSIP1-003 protein_coding Homo_sapiens 0 1452
ENST00000380738 PSIP1-004 protein_coding Homo_sapiens 0 1465
ENST00000397519 PSIP1-201 protein_coding Homo_sapiens 0 1844
ENST00000422292 RP11-54D18.4-001 processed_pseudogene Homo_sapiens 0 1127
ENST00000463712 PSIP1-010 processed_transcript Homo_sapiens 0 632
ENST00000481862 PSIP1-005 protein_coding Homo_sapiens 0 259
ENST00000484265 PSIP1-008 processed_transcript Homo_sapiens 0 442
ENST00000487363 PSIP1-009 processed_transcript Homo_sapiens 0 704
ENST00000488797 PSIP1-001 processed_transcript Homo_sapiens 0 460

Loading