C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neighbor of Brca1 gene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107218 Nbr1-202 ENSMUSG00000017119 10090 + 11:101556058-101581012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverOvaryPlacentaTestisENSMUST00000107218
Transcript ID Brain Heart Liver Ovary Placenta Testis
ENSMUST00000107218 12.943±3.48 6.773±1.41 5.298±1.10 5.691±0.00 15.028±0.00 35.769±10.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040M CIL_00040M_0002 CGP 11:101488764-101581951
CIL_000996 CIL_000996_0002 VISTA 11:101501412-102102123
CIL_00090X CIL_00090X_0002 VISTA 11:101529827-102131014
CIL_0000KX CIL_0000KX_0003 CGP 11:101552149-101591788

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000407 IDA pre-autophagosomal structure
GO:0005515 IPI protein binding
GO:0005764 IEA lysosome
GO:0005770 IDA late endosome
GO:0005776 IDA autophagic vacuole
GO:0005829 ISS cytosol
GO:0008270 IEA zinc ion binding
GO:0016236 ISS macroautophagy
GO:0030500 IMP regulation of bone mineralization
GO:0031410 IEA cytoplasmic vesicle
GO:0032872 IMP regulation of stress-activated MAPK cascade
GO:0043130 ISS ubiquitin binding
GO:0045668 IMP negative regulation of osteoblast differentiation
GO:0051019 IDA mitogen-activated protein kinase binding
GO:0051259 ISS protein oligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341165 NBR1-001 protein_coding Homo_sapiens 0 2327
ENST00000422280 NBR1-201 protein_coding Homo_sapiens 0 2327
ENST00000542611 NBR1-002 protein_coding Homo_sapiens 0 2073
ENST00000585505 NBR1-005 retained_intron Homo_sapiens 0 1061
ENST00000586650 NBR1-007 protein_coding Homo_sapiens 0 217
ENST00000589872 NBR1-004 protein_coding Homo_sapiens 0 2327
ENST00000590996 NBR1-003 protein_coding Homo_sapiens 0 2327
ENST00000592304 NBR1-006 retained_intron Homo_sapiens 9.99967e-42 174
ENST00000617399 NBR1-202 misc_RNA Homo_sapiens 2e-17 90

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