C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fras1 related extracellular matrix protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107230 Frem1-001 ENSMUSG00000059049 10090 - 4:82897927-83052339 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000107230
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000107230 0.157±0.00 0.513±0.01 0.928±0.00 0.227±0.00 0.550±0.00 0.237±0.17 0.582±0.00 1.584±1.01 0.448±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000943 CIL_000943_0002 VISTA 4:82615373-83218271
CIL_000149 CIL_000149_0002 CGP 4:82881751-83052339
CIL_00014A CIL_00014A_0002 CGP 4:82897920-83324255

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005604 IDA basement membrane
GO:0007154 IEA cell communication
GO:0007160 IMP cell-matrix adhesion
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding
GO:0097094 ISS craniofacial suture morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380875 FREM1-005 nonsense_mediated_decay Homo_sapiens 0 3443
ENST00000380880 FREM1-001 protein_coding Homo_sapiens 0 5626
ENST00000380894 FREM1-002 protein_coding Homo_sapiens 0 1773
ENST00000422223 FREM1-201 protein_coding Homo_sapiens 0 5609

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