C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor I/B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107245 Nfib-001 ENSMUSG00000008575 10090 - 4:82290173-82505770 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107245
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107245 2.949±0.01 1.607±0.03 3.258±0.97 1.604±0.29 0.920±0.27 0.778±0.00 0.297±0.01 3.826±0.17 1.345±0.00 1.116±0.26 0.426±0.20 0.126±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000746 CIL_000746_0002 CGP 4:81278500-82705750
CIL_0007VJ CIL_0007VJ_0002 VISTA 4:81853582-82454380
CIL_000143 CIL_000143_0002 CGP 4:82290173-82859958

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0008285 IMP negative regulation of cell proliferation
GO:0030324 IMP lung development
GO:0030900 IMP forebrain development
GO:0030902 IMP hindbrain development
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380921 NFIB-006 protein_coding Homo_sapiens 0 1430
ENST00000380924 NFIB-008 protein_coding Homo_sapiens 0 1005
ENST00000380934 NFIB-201 protein_coding Homo_sapiens 0 3997
ENST00000380953 NFIB-005 protein_coding Homo_sapiens 0 3421
ENST00000380959 NFIB-001 protein_coding Homo_sapiens 0 3997
ENST00000397575 NFIB-004 protein_coding Homo_sapiens 0 2859
ENST00000397579 NFIB-002 protein_coding Homo_sapiens 0 2713
ENST00000397581 NFIB-003 protein_coding Homo_sapiens 0 2974
ENST00000493697 NFIB-007 protein_coding Homo_sapiens 0 730
ENST00000543693 NFIB-202 protein_coding Homo_sapiens 0 3997
ENST00000606230 NFIB-009 protein_coding Homo_sapiens 0 241
ENST00000622101 NFIB-203 protein_coding Homo_sapiens 0 3997
ENST00000622520 NFIB-204 protein_coding Homo_sapiens 0 1434

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