C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107289 Ptprd-001 ENSMUSG00000028399 10090 - 4:75941238-76449980 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000107289
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000107289 2.445±1.06 1.615±0.58 0.618±0.07 8.749±4.16 2.291±0.21 0.480±0.27 5.522±1.33 1.525±1.22 4.246±0.53 0.176±0.06 5.591±1.71 0.474±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OT CIL_0003OT_0002 CGP 4:75277354-78211961
CIL_0007VK CIL_0007VK_0002 VISTA 4:75400793-76001396
CIL_0007LL CIL_0007LL_0002 UCNEbase 4:75700943-76138737
CIL_0005UW CIL_0005UW_0003 CGP 4:75941238-80851719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0007157 IDA heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016021 IEA integral component of membrane
GO:0030182 IDA neuron differentiation
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0050775 IDA positive regulation of dendrite morphogenesis
GO:0050839 IPI cell adhesion molecule binding
GO:0097105 IDA presynaptic membrane assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082630 CABZ01084323.1-201 protein_coding Danio_rerio 0 531
ENST00000355233 PTPRD-201 protein_coding Homo_sapiens 0 3967
ENST00000356435 PTPRD-202 protein_coding Homo_sapiens 0 8329
ENST00000381196 PTPRD-002 protein_coding Homo_sapiens 0 8323
ENST00000397606 PTPRD-006 protein_coding Homo_sapiens 0 2748
ENST00000397611 PTPRD-203 protein_coding Homo_sapiens 0 3980
ENST00000397617 PTPRD-204 protein_coding Homo_sapiens 0 2748
ENST00000463477 PTPRD-001 protein_coding Homo_sapiens 0 784
ENST00000471274 PTPRD-005 processed_transcript Homo_sapiens 0 1535
ENST00000477552 PTPRD-007 retained_intron Homo_sapiens 0 329
ENST00000481079 PTPRD-008 protein_coding Homo_sapiens 0 453
ENST00000486161 PTPRD-003 protein_coding Homo_sapiens 0 3980
ENST00000488774 PTPRD-004 processed_transcript Homo_sapiens 0 455
ENST00000537002 PTPRD-205 protein_coding Homo_sapiens 0 4037
ENST00000540109 PTPRD-206 protein_coding Homo_sapiens 0 8329

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