C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hepatoma-derived growth factor, related protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107305 Hdgfrp3-001 ENSMUSG00000025104 10090 - 7:81881251-81934473 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107305
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107305 4.718±0.71 1.617±0.00 3.865±0.52 27.497±7.66 3.490±0.91 1.484±0.24 1.303±0.38 1.586±0.27 0.639±0.50 4.020±0.39 0.798±0.23 4.518±1.67 0.733±0.49 2.334±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001L6 CIL_0001L6_0002 CGP 7:81859001-81934473
CIL_00037Q CIL_00037Q_0002 CGP 7:81881251-81992299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 NAS chromatin binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0008083 IEA growth factor activity
GO:0008283 ISS cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258909 TM6SF1-004 nonsense_mediated_decay Homo_sapiens 0 263
ENST00000299633 HDGFRP3-001 protein_coding Homo_sapiens 0 2196
ENST00000322019 TM6SF1-001 protein_coding Homo_sapiens 0 263
ENST00000379384 TM6SF1-003 nonsense_mediated_decay Homo_sapiens 0 263
ENST00000379390 TM6SF1-006 protein_coding Homo_sapiens 0 263
ENST00000562702 HDGFRP3-003 protein_coding Homo_sapiens 0 575
ENST00000563404 HDGFRP3-005 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000563790 HDGFRP3-004 nonsense_mediated_decay Homo_sapiens 0 911
ENST00000565774 TM6SF1-005 protein_coding Homo_sapiens 0 261
ENST00000568129 HDGFRP3-002 retained_intron Homo_sapiens 0 276
ENST00000568294 HDGFRP3-006 protein_coding Homo_sapiens 0 564

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