C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tenascin C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107372 Tnc-002 ENSMUSG00000028364 10090 - 4:63959785-64020725 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLungMuscleOvaryPlacentaTestisENSMUST00000107372
Transcript ID Adipose Brain Breast Heart Lung Muscle Ovary Placenta Testis
ENSMUST00000107372 0.339±0.00 11.800±6.61 0.431±0.00 0.102±0.04 0.477±0.02 0.125±0.00 14.898±8.13 0.228±0.12 0.143±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OU CIL_0004OU_0002 CGP 4:63831308-64047015

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 IDA extracellular region
GO:0005604 IDA basement membrane
GO:0005614 IDA interstitial matrix
GO:0007155 IEA cell adhesion
GO:0007528 IMP neuromuscular junction development
GO:0008284 IDA positive regulation of cell proliferation
GO:0010628 IDA positive regulation of gene expression
GO:0014012 IMP peripheral nervous system axon regeneration
GO:0031012 IDA extracellular matrix
GO:0045545 ISO syndecan binding
GO:0060739 IMP mesenchymal-epithelial cell signaling involved in prostate gland development
GO:0060740 IMP prostate gland epithelium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341037 TNC-011 protein_coding Homo_sapiens 0 4361
ENST00000350763 TNC-001 protein_coding Homo_sapiens 0 3801
ENST00000423613 TNC-009 protein_coding Homo_sapiens 0 3801
ENST00000460345 TNC-002 processed_transcript Homo_sapiens 0 505
ENST00000473855 TNC-005 processed_transcript Homo_sapiens 0 296
ENST00000476680 TNC-003 processed_transcript Homo_sapiens 0 431
ENST00000481475 TNC-004 processed_transcript Homo_sapiens 0 440
ENST00000498724 TNC-006 processed_transcript Homo_sapiens 0 492
ENST00000535648 TNC-201 protein_coding Homo_sapiens 0 3190
ENST00000537320 TNC-012 protein_coding Homo_sapiens 0 3190
ENST00000542877 TNC-007 protein_coding Homo_sapiens 0 3168
ENST00000544972 TNC-013 protein_coding Homo_sapiens 0 1482

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