C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: milk fat globule-EGF factor 8 protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107409 Mfge8-202 ENSMUSG00000030605 10090 - 7:79133769-79149060 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107409
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107409 170.244±47.12 214.282±4.92 58.745±1.86 50.611±11.02 261.320±108.12 72.559±6.78 61.357±8.87 76.307±1.98 20.072±13.98 170.555±10.91 17.932±2.55 204.465±59.21 122.005±43.90 27.127±11.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011I CIL_00011I_0002 CGP 7:79117027-79149060
CIL_00011J CIL_00011J_0002 CGP 7:79133769-79365508

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0001786 IDA phosphatidylserine binding
GO:0005178 IDA integrin binding
GO:0005615 IDA extracellular space
GO:0006910 IDA phagocytosis, recognition
GO:0006911 IDA phagocytosis, engulfment
GO:0007155 IEA cell adhesion
GO:0007338 IEA single fertilization
GO:0008429 IDA phosphatidylethanolamine binding
GO:0009897 IDA external side of plasma membrane
GO:0019897 IDA extrinsic component of plasma membrane
GO:0050766 IDA positive regulation of phagocytosis
GO:2000427 IDA positive regulation of apoptotic cell clearance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268150 MFGE8-001 protein_coding Homo_sapiens 0 555
ENST00000268151 MFGE8-004 protein_coding Homo_sapiens 7e-32 143
ENST00000542878 MFGE8-003 protein_coding Homo_sapiens 0 540
ENST00000558018 MFGE8-005 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000560937 MFGE8-006 retained_intron Homo_sapiens 0 305
ENST00000566497 MFGE8-015 protein_coding Homo_sapiens 0 555

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