C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LPS-responsive beige-like anchor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107635 Lrba-201 ENSMUSG00000028080 10090 + 3:86224690-86782693 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107635
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107635 3.094±0.93 2.817±0.77 1.743±0.32 1.970±0.78 3.300±0.98 10.618±0.93 1.348±0.74 6.900±2.92 1.801±0.74 3.879±1.01 2.299±0.80 4.515±0.92 2.541±0.33 1.485±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000648 CIL_000648_0003 CGP 3:86224690-86782693

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007165 TAS signal transduction
GO:0008104 ISA protein localization
GO:0016020 IEA membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016197 TAS endosomal transport
GO:0051018 ISA protein kinase A binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357115 LRBA-002 protein_coding Homo_sapiens 0 7031
ENST00000503716 LRBA-004 processed_transcript Homo_sapiens 0 3040
ENST00000507224 LRBA-008 protein_coding Homo_sapiens 0 9389
ENST00000508396 LRBA-012 processed_transcript Homo_sapiens 5e-35 150
ENST00000509835 LRBA-003 protein_coding Homo_sapiens 0 5792
ENST00000510157 LRBA-010 retained_intron Homo_sapiens 0 1369
ENST00000510413 LRBA-001 protein_coding Homo_sapiens 0 10610
ENST00000510841 LRBA-006 retained_intron Homo_sapiens 0 520
ENST00000513021 LRBA-013 processed_transcript Homo_sapiens 0 776
ENST00000514435 LRBA-007 retained_intron Homo_sapiens 0 612
ENST00000515096 LRBA-009 retained_intron Homo_sapiens 0 1260

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