C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107661 Snx11-001 ENSMUSG00000020876 10090 - 11:96767877-96777559 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107661
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107661 8.108±2.80 6.374±2.17 7.500±1.19 10.919±5.91 5.720±2.14 5.792±1.90 2.674±0.37 4.192±0.81 3.858±1.73 8.849±1.12 3.981±0.79 6.781±2.17 4.074±2.37 4.065±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608
CIL_0007WA CIL_0007WA_0002 VISTA 11:96526222-97127190
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 ISS endosome
GO:0006886 IBA intracellular protein transport
GO:0016020 IEA membrane
GO:0016050 ISS vesicle organization
GO:0035091 IBA phosphatidylinositol binding
GO:1901981 ISS phosphatidylinositol phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359238 SNX11-003 protein_coding Homo_sapiens 4e-25 121
ENST00000393405 SNX11-001 protein_coding Homo_sapiens 5e-25 121
ENST00000452859 SNX11-002 protein_coding Homo_sapiens 3e-25 121
ENST00000580875 SNX11-009 retained_intron Homo_sapiens 1e-25 121
ENST00000581705 SNX11-007 nonsense_mediated_decay Homo_sapiens 2e-25 121
ENST00000583320 SNX11-013 nonsense_mediated_decay Homo_sapiens 2e-25 121

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