C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamyl-tRNA(Gln) amidotransferase, subunit B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107672 Pet112-003 ENSMUSG00000028085 10090 + 3:85574119-85646579 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000107672
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000107672 2.644±0.17 3.128±0.85 0.884±0.00 0.926±0.00 2.189±0.00 6.757±1.53 3.521±1.38 2.093±1.00 0.921±0.28 2.301±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064N CIL_00064N_0002 CGP 3:84444035-85887516
CIL_0004PH CIL_0004PH_0002 CGP 3:84496093-85887516

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0030956 IEA glutamyl-tRNA(Gln) amidotransferase complex
GO:0032543 IEA mitochondrial translation
GO:0050567 IEA glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
GO:0070681 IEA glutaminyl-tRNAGln biosynthesis via transamidation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263985 GATB-001 protein_coding Homo_sapiens 0 1618
ENST00000503160 GATB-005 nonsense_mediated_decay Homo_sapiens 0 1068
ENST00000505211 GATB-011 retained_intron Homo_sapiens 0 665
ENST00000508611 GATB-008 protein_coding Homo_sapiens 0 350
ENST00000511538 GATB-004 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000512306 GATB-003 protein_coding Homo_sapiens 0 1155
ENST00000513504 GATB-012 processed_transcript Homo_sapiens 0 285
ENST00000515490 GATB-010 retained_intron Homo_sapiens 0 531
ENST00000515564 GATB-006 retained_intron Homo_sapiens 0 808
ENST00000515812 GATB-002 protein_coding Homo_sapiens 0 776
ENST00000515884 GATB-009 nonsense_mediated_decay Homo_sapiens 0 473

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