C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 10B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107800 Trmt10b-002 ENSMUSG00000035601 10090 + 4:45300434-45315142 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaTestisENSMUST00000107800
Transcript ID Brain Muscle Ovary Placenta Testis
ENSMUST00000107800 6.385±0.00 0.614±0.14 6.309±0.00 3.937±0.51 5.435±5.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TI CIL_0006TI_0002 CGP 4:45184875-45316131
CIL_00081A CIL_00081A_0002 VISTA 4:45205842-45807105
CIL_0006TH CIL_0006TH_0002 CGP 4:45297127-45342732

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297994 TRMT10B-001 protein_coding Homo_sapiens 0 856
ENST00000377753 TRMT10B-201 protein_coding Homo_sapiens 0 431
ENST00000377754 TRMT10B-002 protein_coding Homo_sapiens 0 708
ENST00000488673 TRMT10B-003 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000509577 TRMT10B-008 retained_intron Homo_sapiens 3e-31 139
ENST00000519377 RP11-790J24.2-001 processed_pseudogene Homo_sapiens 0 420
ENST00000537016 TRMT10B-007 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000537911 TRMT10B-202 protein_coding Homo_sapiens 0 292
ENST00000538370 TRMT10B-004 nonsense_mediated_decay Homo_sapiens 4e-34 148
ENST00000540616 TRMT10B-005 nonsense_mediated_decay Homo_sapiens 0 254

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