C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | musashi RNA-binding protein 2 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000107908  |
Msi2-005 |
ENSMUSG00000069769 |
10090 | - |
11:88685954-88718182  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0009DL | CIL_0009DL_0002 | VISTA | 11:87880548-88481652 |
| CIL_0009DM | CIL_0009DM_0002 | VISTA | 11:87974079-88576075 |
| CIL_0007PL | CIL_0007PL_0002 | UCNEbase | 11:88049942-88585488 |
| CIL_0007R8 | CIL_0007R8_0002 | VISTA | 11:88167358-88768721 |
| CIL_0008GV | CIL_0008GV_0002 | VISTA | 11:88227850-88829479 |
| CIL_000880 | CIL_000880_0002 | VISTA | 11:88254791-88855816 |
| CIL_00039S | CIL_00039S_0002 | CGP | 11:88339382-88864586 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000166 | IEA | nucleotide binding |
| GO:0003727 | IDA | single-stranded RNA binding |
| GO:0005737 | IDA | cytoplasm |
| GO:0005844 | IDA | polysome |
| GO:0008266 | IDA | poly(U) RNA binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000284073
|
MSI2-001 | protein_coding | Homo_sapiens | 0 | 665 |
|
ENST00000322684
|
MSI2-003 | protein_coding | Homo_sapiens | 0 | 444 |
|
ENST00000416426
|
MSI2-002 | protein_coding | Homo_sapiens | 0 | 442 |
|
ENST00000579483
|
MSI2-004 | retained_intron | Homo_sapiens | 0.0000000003 | 73 |
|
ENST00000579531
|
MSI2-019 | processed_transcript | Homo_sapiens | 0 | 442 |
|
ENST00000579590
|
MSI2-009 | protein_coding | Homo_sapiens | 0 | 444 |
|
ENST00000581523
|
MSI2-018 | processed_transcript | Homo_sapiens | 0 | 549 |
|
ENST00000581776
|
MSI2-008 | nonsense_mediated_decay | Homo_sapiens | 0 | 484 |
|
ENST00000582453
|
MSI2-014 | processed_transcript | Homo_sapiens | 0 | 499 |
|
ENST00000584476
|
MSI2-010 | retained_intron | Homo_sapiens | 0 | 392 |
