C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 3110043O21 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108127 3110043O21Rik-001 ENSMUSG00000028300 10090 - 4:35191287-35225880 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108127
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108127 11.401±4.59 1.418±0.28 3.893±0.32 7.970±2.29 4.353±1.32 1.857±0.58 4.115±0.97 2.311±0.55 1.704±0.60 3.170±1.05 3.406±0.80 3.381±1.66 2.430±1.04 3.048±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061J CIL_00061J_0002 CGP 4:35152056-35226175
CIL_00061K CIL_00061K_0002 CGP 4:35191285-36951747

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005764 ISS lysosome
GO:0005768 ISS endosome
GO:0005776 ISS autophagic vacuole
GO:0006897 ISS endocytosis
GO:0006914 ISS autophagy
GO:0017137 IPI Rab GTPase binding
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379995 C9orf72-005 protein_coding Homo_sapiens 0 918
ENST00000379997 C9orf72-003 protein_coding Homo_sapiens 0 918
ENST00000380003 C9orf72-001 protein_coding Homo_sapiens 0 1914
ENST00000461679 C9orf72-004 processed_transcript Homo_sapiens 0 909
ENST00000488117 C9orf72-002 processed_transcript Homo_sapiens 0 1035
ENST00000619707 C9orf72-201 protein_coding Homo_sapiens 0 1914

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