C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108430 Rps19-001 ENSMUSG00000040952 10090 + 7:24884371-24889806 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108430
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108430 93.038±34.39 536.716±31.20 198.461±29.00 82.955±28.72 104.666±20.45 52.414±9.74 114.120±12.70 257.910±255.66 86.511±24.14 55.750±11.72 138.069±40.68 474.952±23.34 38.051±25.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WP CIL_0003WP_0002 CGP 7:24870057-24889806
CIL_0003W3 CIL_0003W3_0002 CGP 7:24884371-24902197

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000028 IEA ribosomal small subunit assembly
GO:0000462 IEA maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002548 IEA monocyte chemotaxis
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005730 ISS nucleolus
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0005925 IEA focal adhesion
GO:0006364 IEA rRNA processing
GO:0006412 IEA translation
GO:0007000 IEA nucleolus organization
GO:0016020 IEA membrane
GO:0017134 IEA fibroblast growth factor binding
GO:0019901 IEA protein kinase binding
GO:0022627 ISS cytosolic small ribosomal subunit
GO:0030218 ISS erythrocyte differentiation
GO:0030490 IEA maturation of SSU-rRNA
GO:0042274 IEA ribosomal small subunit biogenesis
GO:0042803 IEA protein homodimerization activity
GO:0044822 IEA poly(A) RNA binding
GO:0051262 IEA protein tetramerization
GO:0060265 IEA positive regulation of respiratory burst involved in inflammatory response
GO:0060266 IEA negative regulation of respiratory burst involved in inflammatory response
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221975 RPS19-005 protein_coding Homo_sapiens 0 706
ENST00000405355 RP11-346C16.4-001 processed_pseudogene Homo_sapiens 0 466
ENST00000415286 RPS19P1-001 processed_pseudogene Homo_sapiens 0 564
ENST00000455650 RP11-445N18.3-001 processed_pseudogene Homo_sapiens 0 427
ENST00000457967 RP11-389O22.4-001 processed_pseudogene Homo_sapiens 0 385
ENST00000477321 RP11-289K10.1-001 processed_pseudogene Homo_sapiens 0 484
ENST00000480487 RPS19P3-001 processed_pseudogene Homo_sapiens 0 551
ENST00000593863 RPS19-006 protein_coding Homo_sapiens 0 706
ENST00000598261 RPS19-007 protein_coding Homo_sapiens 0 361
ENST00000598399 RPS19-008 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000598466 RPS19-004 retained_intron Homo_sapiens 0 327
ENST00000598742 RPS19-001 protein_coding Homo_sapiens 0 883
ENST00000600467 RPS19-002 protein_coding Homo_sapiens 0 350
ENST00000601492 RPS19-003 protein_coding Homo_sapiens 0 327

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