C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 88
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108530 Nup88-002 ENSMUSG00000040667 10090 - 11:70943102-70969954 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108530
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108530 12.400±3.07 26.382±8.26 23.645±2.11 31.626±3.61 12.724±3.36 13.772±2.58 11.642±1.22 10.837±0.63 14.256±8.40 13.717±1.46 10.008±1.82 19.240±7.72 25.265±6.36 35.940±9.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020X CIL_00020X_0002 CGP 11:70790932-70943105
CIL_00060J CIL_00060J_0003 CGP 11:70844778-70969973
CIL_00045W CIL_00045W_0002 CGP 11:70943058-70977833

Gene Ontology

GO IDEvidence TypeGO Description
GO:0015031 IEA protein transport
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225696 NUP88-004 protein_coding Homo_sapiens 0 1565
ENST00000570937 NUP88-007 retained_intron Homo_sapiens 0 331
ENST00000572019 NUP88-009 processed_transcript Homo_sapiens 0 268
ENST00000572290 NUP88-005 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000573584 NUP88-001 protein_coding Homo_sapiens 0 2510
ENST00000574087 NUP88-011 retained_intron Homo_sapiens 0 676
ENST00000574855 NUP88-012 retained_intron Homo_sapiens 0 436
ENST00000574867 NUP88-002 retained_intron Homo_sapiens 0 1736
ENST00000575976 NUP88-008 retained_intron Homo_sapiens 0 222
ENST00000576708 NUP88-010 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000576862 NUP88-013 retained_intron Homo_sapiens 0 632

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