C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: profilin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108549 Pfn1-002 ENSMUSG00000018293 10090 - 11:70652622-70654598 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000108549
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000108549 39.331±0.00 170.279±0.00 249.586±161.68 19.811±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000C6 CIL_0000C6_0002 CGP 11:70647235-70654644
CIL_000060 CIL_000060_0002 CGP 11:70651850-70662513

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IGI neural tube closure
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0008064 TAS regulation of actin polymerization or depolymerization
GO:0030036 IEA actin cytoskeleton organization
GO:0042989 TAS sequestering of actin monomers

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225655 PFN1-001 protein_coding Homo_sapiens 0 604
ENST00000434838 NBPF3-003 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000442087 PFN1P1-001 processed_pseudogene Homo_sapiens 0 436
ENST00000445829 PFN1P11-001 processed_pseudogene Homo_sapiens 0 270
ENST00000455938 PFN1P12-001 processed_pseudogene Homo_sapiens 0 307
ENST00000455962 PFN1P10-001 processed_pseudogene Homo_sapiens 0 346
ENST00000519266 ENO3-007 protein_coding Homo_sapiens 4e-27 124
ENST00000520221 ENO3-019 protein_coding Homo_sapiens 7e-38 161
ENST00000572383 PFN1-003 protein_coding Homo_sapiens 0 507
ENST00000574872 PFN1-002 protein_coding Homo_sapiens 0 287

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