C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heart and neural crest derivatives expressed transcript 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108845 Hand1-002 ENSMUSG00000037335 10090 - 11:57831694-57832818 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSMUST00000108845
Transcript ID Brain
ENSMUST00000108845 0.048±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C8 CIL_0009C8_0002 VISTA 11:57350678-57952744
CIL_00094E CIL_00094E_0002 VISTA 11:57350713-57952688
CIL_00099I CIL_00099I_0002 VISTA 11:57547462-58147793
CIL_00088D CIL_00088D_0002 VISTA 11:57627590-58231336
CIL_0001UK CIL_0001UK_0002 CGP 11:57801637-57832818
CIL_00023W CIL_00023W_0002 CGP 11:57828705-58062034

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0001525 IMP angiogenesis
GO:0001701 IMP in utero embryonic development
GO:0001707 IMP mesoderm formation
GO:0001947 IMP heart looping
GO:0003144 IMP embryonic heart tube formation
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007507 IGI heart development
GO:0008134 IPI transcription factor binding
GO:0030154 IGI cell differentiation
GO:0035050 IMP embryonic heart tube development
GO:0042475 IGI odontogenesis of dentin-containing tooth
GO:0042803 IDA protein homodimerization activity
GO:0043433 IDA negative regulation of sequence-specific DNA binding transcription factor activity
GO:0043565 IGI sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IPI protein heterodimerization activity
GO:0055010 IMP ventricular cardiac muscle tissue morphogenesis
GO:0060485 IGI mesenchyme development
GO:0060536 IGI cartilage morphogenesis
GO:0060707 IDA trophoblast giant cell differentiation
GO:0061371 IMP determination of heart left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231121 HAND1-001 protein_coding Homo_sapiens 9.94922e-44 182

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