C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec24 related gene family, member A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109097 Sec24a-001 ENSMUSG00000036391 10090 - 11:51692264-51756618 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109097
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109097 3.182±1.45 3.161±0.79 4.417±0.46 4.426±0.61 3.138±0.79 4.808±0.63 1.339±0.55 2.320±0.92 6.961±2.43 4.063±0.59 3.193±0.27 3.797±1.32 6.005±3.20 1.724±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089W CIL_00089W_0002 VISTA 11:51640537-52246109

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0030127 IEA COPII vesicle coat
GO:0045714 IMP regulation of low-density lipoprotein particle receptor biosynthetic process
GO:0050714 IMP positive regulation of protein secretion
GO:2000189 IMP positive regulation of cholesterol homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322887 SEC24A-002 protein_coding Homo_sapiens 0 1960
ENST00000398844 SEC24A-001 protein_coding Homo_sapiens 0 3899
ENST00000507419 SAR1B-004 protein_coding Homo_sapiens 3e-26 124
ENST00000513123 SEC24A-003 protein_coding Homo_sapiens 0 619

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