C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109125 Spo11-003 ENSMUSG00000005883 10090 + 2:172979842-172993565 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109125
Transcript ID Adipose Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109125 0.176±0.00 0.010±0.00 0.061±0.04 0.012±0.01 0.041±0.01 0.032±0.00 0.115±0.10 0.041±0.03 18.574±10.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_0006IN CIL_0006IN_0003 CGP 2:172868012-172993576
CIL_0002XR CIL_0002XR_0002 CGP 2:172977700-173015739

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0000781 IDA chromosome, telomeric region
GO:0001541 IMP ovarian follicle development
GO:0003677 IEA DNA binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0007129 IMP synapsis
GO:0007131 IMP reciprocal meiotic recombination
GO:0007141 IMP male meiosis I
GO:0007286 IMP spermatid development
GO:0016787 IEA hydrolase activity
GO:0034502 IMP protein localization to chromosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345868 SPO11-002 protein_coding Homo_sapiens 0 857
ENST00000371260 SPO11-003 protein_coding Homo_sapiens 0 813
ENST00000371263 SPO11-001 protein_coding Homo_sapiens 0.0000000000002 82

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