C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, T
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109442 Ptprt-002 ENSMUSG00000053141 10090 - 2:161526357-162661094 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastOvaryPlacentaTestisENSMUST00000109442
Transcript ID Adrenal Breast Ovary Placenta Testis
ENSMUST00000109442 0.035±0.01 0.035±0.00 0.551±0.05 0.002±0.00 0.033±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E5 CIL_0004E5_0002 CGP 2:160946978-162661147
CIL_0004E4 CIL_0004E4_0002 CGP 2:161521990-162937121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IMP protein tyrosine phosphatase activity
GO:0006470 IDA protein dephosphorylation
GO:0008013 IDA beta-catenin binding
GO:0016020 IEA membrane
GO:0016790 IDA thiolester hydrolase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0045294 IDA alpha-catenin binding
GO:0045295 IPI gamma-catenin binding
GO:0045296 IPI cadherin binding
GO:0051393 IDA alpha-actinin binding
GO:0070097 IPI delta-catenin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356100 PTPRT-004 protein_coding Homo_sapiens 0 5890
ENST00000373184 PTPRT-006 protein_coding Homo_sapiens 0 2680
ENST00000373187 PTPRT-002 protein_coding Homo_sapiens 0 2898
ENST00000373190 PTPRT-001 protein_coding Homo_sapiens 0 2880
ENST00000373193 PTPRT-009 protein_coding Homo_sapiens 0 3114
ENST00000373198 PTPRT-005 protein_coding Homo_sapiens 0 3114
ENST00000373201 PTPRT-007 protein_coding Homo_sapiens 0 3109
ENST00000612229 PTPRT-201 protein_coding Homo_sapiens 0 2898
ENST00000617474 PTPRT-010 nonsense_mediated_decay Homo_sapiens 0 2793
ENST00000618610 PTPRT-202 protein_coding Homo_sapiens 0 2789
ENST00000620410 PTPRT-203 protein_coding Homo_sapiens 0 1195

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