C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rous sarcoma oncogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109531 Src-005 ENSMUSG00000027646 10090 + 2:157455671-157471838 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000109531
Transcript ID Adrenal Bladder Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000109531 1.757±0.37 7.705±2.30 11.673±0.00 3.935±0.00 0.721±0.46 0.564±0.23 0.566±0.25 7.060±2.19 11.926±6.63 0.961±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006YE CIL_0006YE_0002 CGP 2:157367594-157471862
CIL_0006Y4 CIL_0006Y4_0002 CGP 2:157418444-157571274

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IDA protein kinase activity
GO:0004713 IMP protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005884 IDA actin filament
GO:0005886 IDA plasma membrane
GO:0006468 IDA protein phosphorylation
GO:0016301 IMP kinase activity
GO:0016477 IMP cell migration
GO:0018108 IDA peptidyl-tyrosine phosphorylation
GO:0019904 IPI protein domain specific binding
GO:0030900 IGI forebrain development
GO:0032587 IDA ruffle membrane
GO:0033146 IMP regulation of intracellular estrogen receptor signaling pathway
GO:0034446 IDA substrate adhesion-dependent cell spreading
GO:0035556 IGI intracellular signal transduction
GO:0036035 IGI osteoclast development
GO:0036120 IDA cellular response to platelet-derived growth factor stimulus
GO:0043393 IDA regulation of protein binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048477 IMP oogenesis
GO:0060065 IMP uterus development
GO:0060444 IMP branching involved in mammary gland duct morphogenesis
GO:0060491 IGI regulation of cell projection assembly
GO:0071803 IDA positive regulation of podosome assembly
GO:0090263 IGI positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000036635 fynb-001 protein_coding Danio_rerio 0 508
ENST00000358208 SRC-201 protein_coding Homo_sapiens 0 2130
ENST00000373558 SRC-005 protein_coding Homo_sapiens 0 2012
ENST00000373567 SRC-002 protein_coding Homo_sapiens 0 2098
ENST00000373578 SRC-001 protein_coding Homo_sapiens 0 2130
ENST00000472968 SRC-003 processed_transcript Homo_sapiens 0 416
ENST00000477066 SRC-004 processed_transcript Homo_sapiens 0 1147
ENST00000489153 SRC-006 processed_transcript Homo_sapiens 0 555
ENST00000493775 SRC-009 processed_transcript Homo_sapiens 0 342

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