C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TOX high mobility group box family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109621 Tox3-001 ENSMUSG00000043668 10090 - 8:90247040-90348343 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109621
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109621 1.714±0.03 1.566±0.22 0.139±0.07 13.480±11.42 0.432±0.24 5.789±2.17 0.691±0.43 3.335±0.52 0.050±0.05 1.817±0.16 0.020±0.01 2.266±1.57 0.186±0.08 0.305±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_0007X1 CIL_0007X1_0002 VISTA 8:89711558-90312979
CIL_0008J3 CIL_0008J3_0002 VISTA 8:89903841-90504770
CIL_00085C CIL_00085C_0002 VISTA 8:89913533-90514666
CIL_0008LS CIL_0008LS_0002 VISTA 8:89943821-90546886
CIL_0008J0 CIL_0008J0_0002 VISTA 8:89976086-90577206
CIL_0008J1 CIL_0008J1_0002 VISTA 8:90001584-90603038
CIL_000859 CIL_000859_0002 VISTA 8:90022237-90623493
CIL_0007WW CIL_0007WW_0002 VISTA 8:90027959-90629477
CIL_0008U8 CIL_0008U8_0002 VISTA 8:90194121-90799562
CIL_00077Q CIL_00077Q_0002 CGP 8:90247040-91054508

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 ISS chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0034056 ISS estrogen response element binding
GO:0042803 ISS protein homodimerization activity
GO:0043524 ISS negative regulation of neuron apoptotic process
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0051219 IEA phosphoprotein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219746 TOX3-003 protein_coding Homo_sapiens 0 4019
ENST00000407228 TOX3-002 protein_coding Homo_sapiens 0 3646
ENST00000563091 TOX3-004 protein_coding Homo_sapiens 0 640
ENST00000566696 TOX3-006 retained_intron Homo_sapiens 0 2593
ENST00000568436 TOX3-005 nonsense_mediated_decay Homo_sapiens 0 233

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