C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cylindromatosis (turban tumor syndrome)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109626 Cyld-203 ENSMUSG00000036712 10090 + 8:88705222-88751945 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000109626
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109626 1.728±0.45 3.245±1.03 3.043±0.00 7.995±0.00 1.058±0.22 2.118±0.93 1.227±0.00 1.089±0.50 1.244±0.00 1.867±0.35 2.606±1.92 3.674±2.12 3.234±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_00090I CIL_00090I_0002 VISTA 8:88457981-89059109
CIL_00085B CIL_00085B_0002 VISTA 8:88474689-89076074
CIL_00090J CIL_00090J_0002 VISTA 8:88479183-89079972
CIL_00090K CIL_00090K_0002 VISTA 8:88577161-89178261
CIL_00090L CIL_00090L_0002 VISTA 8:88581293-89181923
CIL_00090M CIL_00090M_0002 VISTA 8:88602694-89203557
CIL_00090N CIL_00090N_0002 VISTA 8:88624827-89225618
CIL_0008AU CIL_0008AU_0002 VISTA 8:88639020-89240224
CIL_0003PR CIL_0003PR_0002 CGP 8:88647315-88751945
CIL_0008AT CIL_0008AT_0002 VISTA 8:88673175-89274114
CIL_0008AL CIL_0008AL_0002 VISTA 8:88691555-89292644
CIL_00077S CIL_00077S_0002 CGP 8:88697028-89044162

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005829 ISS cytosol
GO:0005881 ISS cytoplasmic microtubule
GO:0005886 IEA plasma membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007346 IBA regulation of mitotic cell cycle
GO:0008270 ISS zinc ion binding
GO:0016055 IEA Wnt signaling pathway
GO:0016579 IMP protein deubiquitination
GO:0030496 ISS midbody
GO:0032088 ISS negative regulation of NF-kappaB transcription factor activity
GO:0042347 ISS negative regulation of NF-kappaB import into nucleus
GO:0045581 IDA negative regulation of T cell differentiation
GO:0061578 IBA Lys63-specific deubiquitinase activity
GO:0070266 IGI necroptotic process
GO:0070536 ISS protein K63-linked deubiquitination
GO:0090090 ISS negative regulation of canonical Wnt signaling pathway
GO:1901026 IMP ripoptosome assembly involved in necroptotic process
GO:2001238 IBA positive regulation of extrinsic apoptotic signaling pathway
GO:2001242 IBA regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311559 CYLD-003 protein_coding Homo_sapiens 0 4235
ENST00000398568 CYLD-005 protein_coding Homo_sapiens 0 4015
ENST00000427738 CYLD-010 protein_coding Homo_sapiens 0 4228
ENST00000562884 CYLD-015 protein_coding Homo_sapiens 0 344
ENST00000563629 CYLD-008 retained_intron Homo_sapiens 0 2215
ENST00000563976 CYLD-013 retained_intron Homo_sapiens 0 289
ENST00000564326 CYLD-006 protein_coding Homo_sapiens 0 3819
ENST00000566024 CYLD-014 protein_coding Homo_sapiens 0 204
ENST00000566206 CYLD-002 protein_coding Homo_sapiens 0 3487
ENST00000566679 CYLD-007 protein_coding Homo_sapiens 0 1238
ENST00000568704 CYLD-009 protein_coding Homo_sapiens 0 2194
ENST00000569418 CYLD-001 protein_coding Homo_sapiens 0 4013
ENST00000569681 CYLD-011 protein_coding Homo_sapiens 0 664
ENST00000569891 CYLD-004 retained_intron Homo_sapiens 0 2447

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