C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109679 Slc6a18-202 ENSMUSG00000021612 10090 - 13:73661750-73678023 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000109679
Transcript ID Adipose Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109679 0.019±0.00 0.045±0.00 0.044±0.02 0.010±0.00 0.012±0.01 0.033±0.01 0.041±0.01 0.032±0.00 0.059±0.04 0.032±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JR CIL_0000JR_0002 CGP 13:73627001-73678023
CIL_0000JA CIL_0000JA_0002 CGP 13:73661750-73704865

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003333 IDA amino acid transmembrane transport
GO:0005215 TAS transporter activity
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006810 TAS transport
GO:0006836 IEA neurotransmitter transport
GO:0031526 IDA brush border membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324642 SLC6A18-001 protein_coding Homo_sapiens 0 1182

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