C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2A histone family, member V
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109737 H2afv-001 ENSMUSG00000041126 10090 - 11:6427229-6444443 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109737
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109737 22.218±10.37 23.708±4.44 22.729±4.60 35.256±23.47 15.641±10.18 44.772±9.84 15.211±2.68 30.165±8.96 22.927±5.40 36.092±8.26 11.405±1.37 47.963±26.70 8.057±6.65 4.855±2.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SB CIL_0000SB_0002 CGP 11:6415443-6444443
CIL_0007BS CIL_0007BS_0003 CGP 11:6427229-6475917

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0008150 ND biological_process
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222690 H2AFV-001 protein_coding Homo_sapiens 0 460
ENST00000308153 H2AFV-002 protein_coding Homo_sapiens 0 551
ENST00000349299 H2AFV-004 protein_coding Homo_sapiens 0 259
ENST00000350771 H2AFV-003 protein_coding Homo_sapiens 0 429
ENST00000381124 H2AFV-007 protein_coding Homo_sapiens 0 303
ENST00000437072 H2AFV-005 protein_coding Homo_sapiens 4.00001e-40 169
ENST00000446531 H2AFV-006 protein_coding Homo_sapiens 0 460
ENST00000521529 H2AFV-008 protein_coding Homo_sapiens 2.94273e-44 182
ENST00000554246 RP11-386M24.4-001 transcribed_processed_pseudogene Homo_sapiens 0 449
ENST00000556424 RP11-386M24.4-002 processed_transcript Homo_sapiens 3e-30 135

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