C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatase and actin regulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110161 Phactr1-201 ENSMUSG00000054728 10090 + 13:42682698-43135189 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryENSMUST00000110161
Transcript ID Brain Liver Muscle Ovary
ENSMUST00000110161 88.489±0.00 0.070±0.00 0.228±0.00 3.294±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IC CIL_0003IC_0002 CGP 13:42301270-43138526
CIL_0001BV CIL_0001BV_0003 CGP 13:42680623-43171501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA:IDA actin binding
GO:0004864 IEA protein phosphatase inhibitor activity
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0030054 IEA cell junction
GO:0031032 IMP actomyosin structure organization
GO:0031532 IMP actin cytoskeleton reorganization
GO:0043086 IEA negative regulation of catalytic activity
GO:0043149 IMP stress fiber assembly
GO:0045202 IEA synapse
GO:0048870 IEA cell motility

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332995 PHACTR1-005 protein_coding Homo_sapiens 0 1345
ENST00000379329 PHACTR1-004 protein_coding Homo_sapiens 0 351
ENST00000379335 PHACTR1-003 protein_coding Homo_sapiens 0 449
ENST00000379348 PHACTR1-010 protein_coding Homo_sapiens 0 379
ENST00000379350 PHACTR1-001 protein_coding Homo_sapiens 0 994
ENST00000406205 PHACTR1-006 protein_coding Homo_sapiens 0 776
ENST00000415087 PHACTR1-201 protein_coding Homo_sapiens 0 1345
ENST00000434977 PHACTR1-002 protein_coding Homo_sapiens 0 721
ENST00000489548 PHACTR1-009 processed_transcript Homo_sapiens 0 405
ENST00000502313 HMGB1P21-001 processed_pseudogene Homo_sapiens 0.0001 53

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