C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B cell factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110288 Ebf4-002 ENSMUSG00000053552 10090 + 2:130295169-130370481 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110288
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110288 1.332±1.26 1.159±0.71 1.441±0.23 4.603±0.02 0.234±0.00 0.617±0.00 0.134±0.00 0.222±0.13 0.060±0.04 0.363±0.06 0.383±0.00 4.219±1.17 0.386±0.08 0.261±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FY CIL_0000FY_0002 CGP 2:130279309-130370481
CIL_0000FX CIL_0000FX_0002 CGP 2:130295169-130397574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008134 IPI transcription factor binding
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000100508 ebf1b-201 protein_coding Danio_rerio 0 516
ENSDART00000136729 ebf1b-001 protein_coding Danio_rerio 0 340
ENST00000342725 EBF4-009 protein_coding Homo_sapiens 0 2438
ENST00000380648 EBF4-201 protein_coding Homo_sapiens 0 2717
ENST00000449079 EBF4-002 nonsense_mediated_decay Homo_sapiens 0 2254
ENST00000463145 EBF4-006 protein_coding Homo_sapiens 0 494
ENST00000469215 EBF4-005 processed_transcript Homo_sapiens 0 651
ENST00000477287 EBF4-003 processed_transcript Homo_sapiens 0 464
ENST00000481662 EBF4-008 processed_transcript Homo_sapiens 2e-24 115
ENST00000491472 EBF4-007 processed_transcript Homo_sapiens 0 442
ENST00000497450 EBF4-004 processed_transcript Homo_sapiens 0 551
ENST00000609451 EBF4-011 protein_coding Homo_sapiens 0 2370
ENST00000609967 EBF4-010 retained_intron Homo_sapiens 0 1605

Loading