C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) I polypeptide D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110557 Polr1d-002 ENSMUSG00000029642 10090 + 5:147077346-147111361 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110557
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110557 15.050±0.95 20.495±3.69 27.263±1.81 15.246±5.44 10.324±3.49 16.127±7.16 2.970±1.07 10.332±3.40 15.106±12.02 12.961±3.96 13.112±0.80 21.717±8.54 30.237±4.62 54.487±4.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CO CIL_0008CO_0002 VISTA 5:146855041-147456530
CIL_00082E CIL_00082E_0002 VISTA 5:146922660-147524221
CIL_0007MT CIL_0007MT_0002 UCNEbase 5:146994099-147547626
CIL_0004M8 CIL_0004M8_0002 CGP 5:147016655-147111361
CIL_0004CM CIL_0004CM_0002 CGP 5:147077050-147190947

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001056 IBA RNA polymerase III activity
GO:0005515 IPI protein binding
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005736 IDA DNA-directed RNA polymerase I complex
GO:0006360 IBA transcription from RNA polymerase I promoter
GO:0006383 IBA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399697 POLR1D-004 protein_coding Homo_sapiens 0 313
ENST00000465887 POLR1D-005 processed_transcript Homo_sapiens 0 289
ENST00000621089 POLR1D-202 protein_coding Homo_sapiens 0 259

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