C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cancer susceptibility candidate 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110586 Casc4-201 ENSMUSG00000060227 10090 + 2:121866970-121936205 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110586
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110586 1.616±1.27 8.305±1.81 1.195±0.34 3.498±0.06 1.027±0.31 3.290±1.88 0.320±0.01 3.913±0.70 1.029±0.66 3.221±0.81 0.178±0.00 10.677±2.81 2.773±1.05 1.834±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000687 CIL_000687_0002 CGP 2:121545529-121936220

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299957 CASC4-001 protein_coding Homo_sapiens 0 1339
ENST00000345795 CASC4-002 protein_coding Homo_sapiens 0 1764
ENST00000429162 CASC4-004 processed_transcript Homo_sapiens 0 488
ENST00000456608 CASC4P1-001 processed_pseudogene Homo_sapiens 0 1173
ENST00000557945 CASC4-005 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000558735 CASC4-007 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000558847 CASC4-009 protein_coding Homo_sapiens 0 479
ENST00000559222 CASC4-006 protein_coding Homo_sapiens 0 728

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