C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi to ER traffic protein 4 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110878 Get4-002 ENSMUSG00000025858 10090 + 5:139253511-139269329 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonLiverMuscleOvaryPlacentaTestisENSMUST00000110878
Transcript ID Adipose Adrenal Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000110878 7.014±0.00 30.887±0.00 14.367±1.29 16.453±10.53 9.316±1.69 9.104±2.39 28.710±15.84 20.075±7.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018J CIL_00018J_0002 CGP 5:139200637-139270051
CIL_0008V5 CIL_0008V5_0002 VISTA 5:139236245-139837428
CIL_0008DL CIL_0008DL_0002 VISTA 5:139238772-139840184
CIL_000186 CIL_000186_0002 CGP 5:139252324-139325622

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005829 ISS cytosol
GO:0006810 IEA transport
GO:0071816 ISS tail-anchored membrane protein insertion into ER membrane
GO:0071818 ISS BAT3 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265857 GET4-001 protein_coding Homo_sapiens 0 865
ENST00000407192 GET4-002 protein_coding Homo_sapiens 0 865
ENST00000412734 GET4-006 protein_coding Homo_sapiens 0 464
ENST00000426056 GET4-004 protein_coding Homo_sapiens 0 281
ENST00000441491 GET4-003 protein_coding Homo_sapiens 0 329
ENST00000457861 SUN1-033 nonsense_mediated_decay Homo_sapiens 0 865

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