C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000110937  |
Taf6-005 |
ENSMUSG00000036980 |
10090 | - |
5:138178620-138187205  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008QI | CIL_0008QI_0002 | VISTA | 5:137705744-138314172 |
| CIL_0003DY | CIL_0003DY_0002 | CGP | 5:138164583-138178708 |
| CIL_0005LK | CIL_0005LK_0002 | CGP | 5:138172002-138187451 |
| CIL_0005LJ | CIL_0005LJ_0002 | CGP | 5:138178617-138193918 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003677 | IDA | DNA binding |
| GO:0005515 | IPI | protein binding |
| GO:0005634 | IDA | nucleus |
| GO:0005669 | ISO | transcription factor TFIID complex |
| GO:0006352 | IEA | DNA-templated transcription, initiation |
| GO:0046982 | IEA | protein heterodimerization activity |
| GO:0051090 | IEA | regulation of sequence-specific DNA binding transcription factor activity |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000344095
|
TAF6-001 | protein_coding | Homo_sapiens | 0 | 2010 |
|
ENST00000416938
|
AP4M1-017 | nonsense_mediated_decay | Homo_sapiens | 0 | 224 |
|
ENST00000421980
|
TAF6-003 | nonsense_mediated_decay | Homo_sapiens | 0 | 1495 |
|
ENST00000437822
|
TAF6-002 | protein_coding | Homo_sapiens | 0 | 2008 |
|
ENST00000452041
|
TAF6-007 | protein_coding | Homo_sapiens | 0 | 2008 |
|
ENST00000453269
|
TAF6-004 | protein_coding | Homo_sapiens | 0 | 2010 |
|
ENST00000472509
|
TAF6-016 | protein_coding | Homo_sapiens | 0 | 2008 |
|
ENST00000487115
|
TAF6-006 | retained_intron | Homo_sapiens | 0 | 309 |
