C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110951 Cops6-002 ENSMUSG00000019494 10090 + 5:138161100-138163978 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110951
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110951 77.431±8.79 65.141±6.30 60.701±7.09 82.649±4.29 76.253±17.95 48.025±5.07 64.973±8.45 79.707±14.43 89.789±21.34 39.976±4.49 54.553±3.94 80.203±13.06 92.037±18.57 116.456±9.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0002GB CIL_0002GB_0002 CGP 5:138139702-138164646
CIL_0003E2 CIL_0003E2_0002 CGP 5:138161071-138172422

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0008180 IDA COP9 signalosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303904 COPS6-001 protein_coding Homo_sapiens 0 1439
ENST00000418625 COPS6-004 protein_coding Homo_sapiens 0 1415
ENST00000419210 COPS6-007 protein_coding Homo_sapiens 0 220
ENST00000426712 COPS6-005 nonsense_mediated_decay Homo_sapiens 0 797
ENST00000465027 COPS6-006 retained_intron Homo_sapiens 0 259
ENST00000468499 COPS6-003 retained_intron Homo_sapiens 0 451
ENST00000472107 COPS6-002 retained_intron Homo_sapiens 0 466
ENST00000474823 COPS6-010 retained_intron Homo_sapiens 0 765
ENST00000483891 COPS6-008 retained_intron Homo_sapiens 0 320
ENST00000496358 COPS6-009 retained_intron Homo_sapiens 0 699

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