C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET and MYND domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111134 Smyd3-004 ENSMUSG00000055067 10090 - 1:179395224-179518041 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000111134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000111134 2.361±1.56 0.558±0.04 3.360±0.00 2.746±0.46 1.924±0.97 2.153±0.44 1.053±0.22 2.605±0.22 1.826±1.22 0.778±0.22 2.446±1.10 1.736±1.08 0.779±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KU CIL_0000KU_0003 CGP 1:178529125-179518041
CIL_0007AO CIL_0007AO_0003 CGP 1:178951960-179546267

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000993 IDA RNA polymerase II core binding
GO:0001162 IDA RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006334 IMP nucleosome assembly
GO:0006469 IMP negative regulation of protein kinase activity
GO:0014904 IMP myotube cell development
GO:0033138 IMP positive regulation of peptidyl-serine phosphorylation
GO:0045184 IMP establishment of protein localization
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0071549 IDA cellular response to dexamethasone stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000403792 SMYD3-012 protein_coding Homo_sapiens 0 601

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