C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tudor domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111606 Tdrd1-002 ENSMUSG00000025081 10090 + 19:56826209-56870012 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverOvaryPlacentaTestisENSMUST00000111606
Transcript ID Adipose Brain Breast Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000111606 0.002±0.00 0.074±0.06 0.010±0.01 0.006±0.00 0.005±0.00 0.020±0.00 0.976±0.14 0.220±0.10 14.830±6.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006OO CIL_0006OO_0002 CGP 19:56787481-56870012
CIL_0002OH CIL_0002OH_0002 CGP 19:56826209-56912078

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0007281 IMP germ cell development
GO:0007283 IMP spermatogenesis
GO:0030529 IDA ribonucleoprotein complex
GO:0031047 IMP gene silencing by RNA
GO:0033391 IDA chromatoid body
GO:0034587 IMP piRNA metabolic process
GO:0043046 IMP DNA methylation involved in gamete generation
GO:0043186 IDA P granule
GO:0046872 IEA metal ion binding
GO:0051321 IEA meiotic cell cycle
GO:0071546 IDA pi-body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251864 TDRD1-201 protein_coding Homo_sapiens 0 2037
ENST00000294485 DRAXIN-001 protein_coding Homo_sapiens 0.00001 58
ENST00000369280 TDRD1-001 protein_coding Homo_sapiens 0 1834
ENST00000369282 TDRD1-002 protein_coding Homo_sapiens 0 1834

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