C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-myc downstream regulated gene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111632 Ndrg2-202 ENSMUSG00000004558 10090 - 14:51905271-51913488 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000111632
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000111632 12.918±2.27 47.643±11.61 31.112±10.66 22.150±4.07 13.534±0.94 17.577±3.82 88.353±15.88 7.520±0.48 12.472±11.15 17.837±3.24 44.530±16.20 1.698±1.08 1.534±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TH CIL_0004TH_0002 CGP 14:51892889-51913488
CIL_00027R CIL_00027R_0002 CGP 14:51905271-51920699

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001818 IMP negative regulation of cytokine production
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0010574 IMP regulation of vascular endothelial growth factor production
GO:0016055 IEA Wnt signaling pathway
GO:0030154 IEA cell differentiation
GO:0042995 IEA cell projection
GO:0048662 IDA negative regulation of smooth muscle cell proliferation
GO:0070373 IMP negative regulation of ERK1 and ERK2 cascade
GO:0090361 IMP regulation of platelet-derived growth factor production

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298684 NDRG2-004 protein_coding Homo_sapiens 0 937
ENST00000298687 NDRG2-008 protein_coding Homo_sapiens 0 1541
ENST00000350792 NDRG2-003 protein_coding Homo_sapiens 0 1631
ENST00000360463 NDRG2-002 protein_coding Homo_sapiens 0 1635
ENST00000366204 NDRG2-070 retained_intron Homo_sapiens 0 224
ENST00000397844 NDRG2-001 protein_coding Homo_sapiens 0 1027
ENST00000397847 NDRG2-007 protein_coding Homo_sapiens 0 889
ENST00000397851 NDRG2-010 protein_coding Homo_sapiens 0 1541
ENST00000397853 NDRG2-005 protein_coding Homo_sapiens 0 1541
ENST00000397856 NDRG2-201 protein_coding Homo_sapiens 0 1513
ENST00000397858 NDRG2-202 protein_coding Homo_sapiens 0 1541
ENST00000403829 NDRG2-016 protein_coding Homo_sapiens 0 1631
ENST00000449431 NDRG2-006 protein_coding Homo_sapiens 0 508
ENST00000553442 NDRG2-050 protein_coding Homo_sapiens 0 686
ENST00000553503 NDRG2-011 protein_coding Homo_sapiens 0 1631
ENST00000553563 NDRG2-058 protein_coding Homo_sapiens 0 342
ENST00000553567 NDRG2-071 retained_intron Homo_sapiens 1e-29 134
ENST00000553593 NDRG2-069 protein_coding Homo_sapiens 0 1007
ENST00000553741 NDRG2-053 retained_intron Homo_sapiens 0 608
ENST00000553784 NDRG2-057 protein_coding Homo_sapiens 0 551
ENST00000553793 NDRG2-072 retained_intron Homo_sapiens 0 562
ENST00000553862 NDRG2-065 retained_intron Homo_sapiens 0 252
ENST00000553867 NDRG2-052 protein_coding Homo_sapiens 0 856
ENST00000553900 NDRG2-033 retained_intron Homo_sapiens 0 475
ENST00000554094 NDRG2-056 protein_coding Homo_sapiens 0 708
ENST00000554104 NDRG2-017 protein_coding Homo_sapiens 0 1541
ENST00000554143 NDRG2-009 protein_coding Homo_sapiens 0 1705
ENST00000554277 NDRG2-077 processed_transcript Homo_sapiens 0 449
ENST00000554379 NDRG2-061 nonsense_mediated_decay Homo_sapiens 0 536
ENST00000554398 NDRG2-051 protein_coding Homo_sapiens 0 455
ENST00000554419 NDRG2-020 protein_coding Homo_sapiens 0 353
ENST00000554472 NDRG2-046 protein_coding Homo_sapiens 0 448
ENST00000554483 NDRG2-035 protein_coding Homo_sapiens 0 542
ENST00000554531 NDRG2-064 protein_coding Homo_sapiens 0 518
ENST00000554561 NDRG2-045 protein_coding Homo_sapiens 0 466
ENST00000555026 NDRG2-019 protein_coding Homo_sapiens 0 1103
ENST00000555142 NDRG2-029 protein_coding Homo_sapiens 0 614
ENST00000555158 NDRG2-012 protein_coding Homo_sapiens 0 1639
ENST00000555384 NDRG2-039 protein_coding Homo_sapiens 0 640
ENST00000555650 NDRG2-074 retained_intron Homo_sapiens 0 532
ENST00000555657 NDRG2-042 protein_coding Homo_sapiens 0 512
ENST00000555695 NDRG2-054 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000555733 NDRG2-036 protein_coding Homo_sapiens 0 747
ENST00000555767 NDRG2-025 nonsense_mediated_decay Homo_sapiens 0 388
ENST00000555869 NDRG2-026 protein_coding Homo_sapiens 0 880
ENST00000556008 NDRG2-034 protein_coding Homo_sapiens 0 1223
ENST00000556147 NDRG2-013 protein_coding Homo_sapiens 0 1541
ENST00000556329 NDRG2-030 protein_coding Homo_sapiens 0 573
ENST00000556366 NDRG2-066 protein_coding Homo_sapiens 0 953
ENST00000556420 NDRG2-038 protein_coding Homo_sapiens 0 651
ENST00000556457 NDRG2-024 protein_coding Homo_sapiens 0 414
ENST00000556688 NDRG2-032 protein_coding Homo_sapiens 0 412
ENST00000556716 NDRG2-018 retained_intron Homo_sapiens 0 484
ENST00000556924 NDRG2-027 protein_coding Homo_sapiens 0 573
ENST00000556974 NDRG2-021 protein_coding Homo_sapiens 0 1110
ENST00000557113 NDRG2-055 retained_intron Homo_sapiens 0 483
ENST00000557149 NDRG2-048 protein_coding Homo_sapiens 0 614
ENST00000557169 NDRG2-059 protein_coding Homo_sapiens 0 902
ENST00000557182 NDRG2-063 protein_coding Homo_sapiens 0 612
ENST00000557198 NDRG2-062 retained_intron Homo_sapiens 0 734
ENST00000557264 NDRG2-047 protein_coding Homo_sapiens 0 599
ENST00000557274 NDRG2-041 protein_coding Homo_sapiens 0 508
ENST00000557305 NDRG2-068 retained_intron Homo_sapiens 0 224
ENST00000557318 NDRG2-060 retained_intron Homo_sapiens 0 385
ENST00000557353 NDRG2-014 nonsense_mediated_decay Homo_sapiens 0 1563
ENST00000557416 NDRG2-073 retained_intron Homo_sapiens 0 333
ENST00000557616 NDRG2-031 nonsense_mediated_decay Homo_sapiens 0 475
ENST00000557633 NDRG2-076 protein_coding Homo_sapiens 0 534
ENST00000557669 NDRG2-022 retained_intron Homo_sapiens 0 479
ENST00000557676 NDRG2-028 protein_coding Homo_sapiens 0 595
ENST00000557728 NDRG2-067 retained_intron Homo_sapiens 0 475

Loading