C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LYR motif containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111726 Lyrm5-001 ENSMUSG00000040370 10090 + 6:145211156-145216539 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000111726
Transcript ID Adipose Bladder Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000111726 10.206±3.12 19.104±1.84 6.619±0.36 18.758±3.69 11.950±3.23 15.869±4.28 19.448±1.00 13.045±3.74 12.010±4.62 4.233±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XB CIL_0008XB_0002 VISTA 6:144644642-145246014
CIL_0004XD CIL_0004XD_0002 CGP 6:145174834-145216939
CIL_0006UC CIL_0006UC_0002 CGP 6:145211134-145250239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000381356 LYRM5-201 protein_coding Homo_sapiens 0 403
ENST00000446798 CTA-415G2.2-002 processed_pseudogene Homo_sapiens 0 292
ENST00000554266 LYRM5-004 protein_coding Homo_sapiens 3e-29 132
ENST00000555711 LYRM5-003 protein_coding Homo_sapiens 0 309
ENST00000556198 LYRM5-011 protein_coding Homo_sapiens 1.4013e-45 185
ENST00000556351 LYRM5-005 protein_coding Homo_sapiens 0 399
ENST00000556402 LYRM5-007 protein_coding Homo_sapiens 0 309
ENST00000556885 LYRM5-002 protein_coding Homo_sapiens 0 403
ENST00000556927 LYRM5-009 protein_coding Homo_sapiens 0 403
ENST00000557540 LYRM5-001 protein_coding Homo_sapiens 0 399

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