C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-pass membrane protein with coiled-coil domains 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111894 Smco3-002 ENSMUSG00000043298 10090 - 6:136830421-136835452 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000111894
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000111894 0.229±0.14 0.364±0.10 1.273±0.00 0.235±0.02 0.167±0.07 0.123±0.03 0.374±0.15 0.067±0.02 0.126±0.00 0.103±0.04 0.203±0.06 0.213±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00036X CIL_00036X_0002 CGP 6:136813654-136840536
CIL_00036Y CIL_00036Y_0002 CGP 6:136828843-136840536
CIL_00036Z CIL_00036Z_0002 CGP 6:136829927-136857733

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316048 SMCO3-001 protein_coding Homo_sapiens 0 656

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