C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112289 Zrsr2-001 ENSMUSG00000031370 10090 - X:163935443-163958589 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112289
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112289 0.715±0.04 1.257±0.10 2.412±0.14 1.507±0.16 1.040±0.06 1.011±0.23 0.476±0.03 0.897±0.13 1.506±0.97 1.340±0.15 1.897±0.37 1.815±1.05 2.446±0.66 0.272±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PF CIL_0006PF_0002 CGP X:163909017-163958661

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005730 IDA nucleolus
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307771 ZRSR2-001 protein_coding Homo_sapiens 0 1142
ENST00000315599 CD209-001 protein_coding Homo_sapiens 0 440
ENST00000391338 ZRSR1-001 protein_coding Homo_sapiens 0 1090
ENST00000497856 REEP5-002 retained_intron Homo_sapiens 0 377
ENST00000506997 CTC-487M23.8-001 nonsense_mediated_decay Homo_sapiens 0 1066
ENST00000511865 REEP5-006 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000512790 CTC-487M23.8-004 processed_transcript Homo_sapiens 0 1090

Loading