C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: metastasis associated 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112349 Mta3-005 ENSMUSG00000055817 10090 + 17:83706163-83792875 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112349
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112349 8.096±0.98 7.508±2.44 14.110±0.39 4.519±0.38 5.221±1.76 6.575±1.88 2.270±0.76 4.033±1.12 5.572±3.62 5.127±0.71 0.872±0.21 9.305±2.75 35.576±18.30 2.437±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TA CIL_0003TA_0003 CGP 17:83585957-83821516

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0008278 IDA cohesin complex
GO:0008284 IMP positive regulation of cell proliferation
GO:0010971 IMP positive regulation of G2/M transition of mitotic cell cycle
GO:0016581 IDA NuRD complex
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000077180 mta3-002 protein_coding Danio_rerio 0 638
ENSDART00000127454 mta3-001 protein_coding Danio_rerio 0 638
ENSDART00000122665 mta3-004 protein_coding Danio_rerio 0 638
ENST00000331320 MTA1-001 protein_coding Homo_sapiens 0 453
ENST00000405094 MTA3-017 protein_coding Homo_sapiens 0 1650
ENST00000405592 MTA3-005 protein_coding Homo_sapiens 0 1581
ENST00000405646 MTA1-003 protein_coding Homo_sapiens 0 601
ENST00000406191 MTA1-002 protein_coding Homo_sapiens 0 453
ENST00000406652 MTA3-001 protein_coding Homo_sapiens 0 1585
ENST00000406911 MTA3-003 protein_coding Homo_sapiens 0 1820
ENST00000407270 MTA3-002 protein_coding Homo_sapiens 0 1857
ENST00000409019 MTA3-018 nonsense_mediated_decay Homo_sapiens 0 1646
ENST00000430763 MTA3-010 nonsense_mediated_decay Homo_sapiens 0 496
ENST00000434050 MTA1-007 protein_coding Homo_sapiens 0 420
ENST00000435036 MTA1-201 protein_coding Homo_sapiens 0 453
ENST00000438610 MTA1-004 nonsense_mediated_decay Homo_sapiens 0 381
ENST00000454356 MTA3-004 nonsense_mediated_decay Homo_sapiens 0 1773
ENST00000461256 MTA3-009 processed_transcript Homo_sapiens 0 483
ENST00000467925 MTA3-006 retained_intron Homo_sapiens 0 431
ENST00000472767 MTA3-014 processed_transcript Homo_sapiens 0 597
ENST00000475383 MTA3-015 processed_transcript Homo_sapiens 0 534
ENST00000481012 MTA1-009 retained_intron Homo_sapiens 0 274
ENST00000482875 MTA3-007 retained_intron Homo_sapiens 0 647
ENST00000484780 MTA3-008 processed_transcript Homo_sapiens 0 361
ENST00000498644 MTA1-017 protein_coding Homo_sapiens 0 252

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