C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112586 Apobec1-001 ENSMUSG00000040613 10090 - 6:122577792-122602444 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000112586
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000112586 3.236±0.40 1.510±0.76 0.125±0.00 4.042±1.38 1.712±0.24 0.762±0.00 0.678±0.31 1.173±0.66 1.413±0.22 3.746±1.61 0.128±0.07 0.166±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0002 VISTA 6:122092605-122696323
CIL_00001I CIL_00001I_0002 CGP 6:122577792-122610087

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0006397 IEA mRNA processing
GO:0006970 IEA response to osmotic stress
GO:0008270 IEA zinc ion binding
GO:0010043 IEA response to zinc ion
GO:0010332 IMP response to gamma radiation
GO:0016554 IMP cytidine to uridine editing
GO:0016556 IMP mRNA modification
GO:0016814 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
GO:0017091 IDA AU-rich element binding
GO:0032869 IEA cellular response to insulin stimulus
GO:0042127 IGI regulation of cell proliferation
GO:0042157 IMP lipoprotein metabolic process
GO:0042158 IGI lipoprotein biosynthetic process
GO:0042493 IEA response to drug
GO:0042953 IGI lipoprotein transport
GO:0045471 IEA response to ethanol
GO:0048255 IDA mRNA stabilization
GO:0051592 IEA response to calcium ion
GO:0051607 IEA defense response to virus
GO:0080111 IDA DNA demethylation
GO:0090310 IMP negative regulation of methylation-dependent chromatin silencing

Homologs

No Homologs available.

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