C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112822 Arhgap15-003 ENSMUSG00000049744 10090 + 2:43748834-44387619 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastKidneyLiverLungOvaryPlacentaENSMUST00000112822
Transcript ID Adipose Bladder Breast Kidney Liver Lung Ovary Placenta
ENSMUST00000112822 1.141±0.00 0.380±0.00 1.079±0.97 0.459±0.18 0.880±0.33 0.343±0.00 0.328±0.00 0.088±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RY CIL_0008RY_0002 VISTA 2:43481987-44083031
CIL_0006M7 CIL_0006M7_0002 CGP 2:43555329-44395953
CIL_0008IO CIL_0008IO_0002 VISTA 2:43677738-44279507
CIL_0008RZ CIL_0008RZ_0002 VISTA 2:43686279-44287229
CIL_0008RC CIL_0008RC_0002 VISTA 2:43689287-44291110
CIL_0006M8 CIL_0006M8_0002 CGP 2:43748824-44927657

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0007165 IEA signal transduction
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295095 ARHGAP15-001 protein_coding Homo_sapiens 0 1604
ENST00000409869 ARHGAP15-002 protein_coding Homo_sapiens 0 370
ENST00000419455 ARHGAP15-006 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000460776 ARHGAP15-003 processed_transcript Homo_sapiens 0 387
ENST00000469117 ARHGAP15-005 processed_transcript Homo_sapiens 0 322
ENST00000474474 ARHGAP15-004 processed_transcript Homo_sapiens 0 387
ENST00000548242 ARHGAP15-010 processed_transcript Homo_sapiens 0 492
ENST00000548800 ARHGAP15-009 retained_intron Homo_sapiens 0 226
ENST00000548929 ARHGAP15-011 retained_intron Homo_sapiens 0 322
ENST00000549060 ARHGAP15-014 processed_transcript Homo_sapiens 0 481
ENST00000549436 ARHGAP15-013 retained_intron Homo_sapiens 0 542
ENST00000552289 ARHGAP15-012 retained_intron Homo_sapiens 0 278
ENST00000552641 ARHGAP15-008 retained_intron Homo_sapiens 0 440

Loading